fastqtools

Introduction

fastq is used to clean raw fastq data…

Authors

Status

Note

not reviewed yet.

Installation

use git to clone code:

git clone git@192.168.1.251:/home/git/fastqtools.git

Attention

if you want to run fastqtools on local server without docker , try to add config.py.

Usage

just type command:

/path/to/fastqClean.py -h
/path/to/fastqStat.py -h
/path/to/fastqSplit.py -h

developments followed by Dcer rules, script will need a yaml file,which shoud contain following key and values

must_args

  • args1
    desc of args2
  • args2
    desc of args2

optinal args

  • args3
    desc of args3

here is a sample yaml file:

args1: value of args1
args2: value of args2

RUN

cli way

copy and paste to your input yaml file and call script:

/path/of/ctpips.py -c your.yml

serer way

send request to jbios with /start/ctpips/:

req = requests.get("http://<server>:port/ctpips/",data=json.dumps(indict))

for jbios detail information check api documentation here