Index

A

autoadaptremove() (fastqtools.readprocess.readprocess.readprocess method)

autocutadaptor() (in module fastqtools.readprocess.tools)

C

checking_adaptor() (in module fastqtools.readprocess.tools) checkN() (in module fastqtools.readprocess.tools) checkqual() (in module fastqtools.readprocess.tools)

checkumi() (in module fastqtools.readprocess.tools) code2score() (in module fastqtools.fastqStat.fastqStat) (in module fastqtools.readprocess.tools) complent() (fastqtools.readprocess.tools.dnaseq static method)

D

diffstr() (in module fastqtools.readprocess.tools)

dnaseq (class in fastqtools.readprocess.tools)

E

enlong_and_find_common() (in module fastqtools.readprocess.tools)

F

fastqMerge() (in module fastqtools.fastqSplit.fastqMerge) fastqReader (class in fastqtools.fastqReader.fastqReader) fastqSplit() (in module fastqtools.fastqSplit.fastqSplit) fastqStat() (in module fastqtools.fastqStat.fastqStat) fastqtools (module) fastqtools.fastqReader (module) fastqtools.fastqReader.fastqReader (module) fastqtools.fastqReader.fastqWriter (module) fastqtools.fastqSplit (module) fastqtools.fastqSplit.fastqMerge (module)

fastqtools.fastqSplit.fastqSplit (module) fastqtools.fastqSplit.getfileNum (module) fastqtools.fastqStat (module) fastqtools.fastqStat.fastqStat (module) fastqtools.fastqStat.getfileNum (module) fastqtools.readprocess (module) fastqtools.readprocess.readprocess (module) fastqtools.readprocess.tools (module) fastqWriter() (in module fastqtools.fastqReader.fastqWriter) find_bins() (in module setup) fq (class in fastqtools.fastqReader.fastqReader)

G

getfileNum() (in module fastqtools.fastqSplit.getfileNum) (in module fastqtools.fastqStat.getfileNum)

L

length() (fastqtools.readprocess.readprocess.readprocess method)

N

nbase() (fastqtools.readprocess.readprocess.readprocess method)

next() (fastqtools.fastqReader.fastqReader.fastqReader method)

Q

qual() (fastqtools.readprocess.readprocess.readprocess method)

qual20() (in module fastqtools.fastqStat.fastqStat)

R

readfile() (in module setup)

readprocess (class in fastqtools.readprocess.readprocess) reverse() (fastqtools.readprocess.tools.dnaseq static method)

S

score2code() (in module fastqtools.fastqStat.fastqStat) (in module fastqtools.readprocess.tools)

seeding() (in module fastqtools.readprocess.tools) setup (module) setup_package() (in module setup)

T

trim() (fastqtools.readprocess.readprocess.readprocess method)

U

umi() (fastqtools.readprocess.readprocess.readprocess method)